Installation

Note

It is recommended to clear cashes regularly in this installation processes.

Download VCF Filter

The module is availabe as one repository for Pulse Bioinformatics, University of Saskatchewan on GitHub. Recommended method of downloading and installation is using git:

cd [your drupal root]/sites/all/modules

git clone https://github.com/UofS-Pulse-Binfo/vcf_filter.git

Dependencies

Required dependencies for VCF Filter

• Tripal Core (utilizes the Tripal API)
• Tripal Donwload API

We can check status of modules in “Home » Administration » Tripal » Modules”.

In this example, it is clear that Trpdownload_api is required but not available in system. Trpdownload_api is availabe on GitHub, and can be installed with following commands:

cd [your drupal root]/sites/all/modules

git clone https://github.com/tripal/trpdownload_api.git

drush pm-enable trpdownload_api

Note

VCFtools is required for VCF Filter.

Enable VCF Filter

After all dependencies are installed and enabled, VCF Filter can be enabled to use in “Home » Administration » Tripal » Modules” of your site.

Also, VCF Filter can be enabled by drush command:

drush pm-enable vcf_filter

This command will enable the module after which we should able to find it in Home » Administration » Tripal » Extensions.